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The main components of a nucleic acid extraction kit usually include the following categories:
Lysis solution
- Function: The main function of the lysis solution is to disrupt the structure of cells or viruses and release nucleic acids. It usually contains surfactants, such as sodium dodecyl sulfate (SDS) or Triton X-100, etc., which can disrupt the lipid bilayer of cell membranes and nuclear membranes to release intracellular contents. At the same time, the lysis solution may also contain enzymes such as proteinase K to help digest intracellular proteins and further release nucleic acids.
- Characteristics: Different lysis solutions may be required for different types of samples. For example, for bacterial samples, the lysis solution may add lysozyme to help destroy the bacterial cell wall; for viral samples, the lysis solution formula focuses more on destroying the coat protein of the virus.
Binding solution
- Function: The main function of the binding solution is to make nucleic acids bind to specific carriers or adsorbing materials. It usually contains high concentrations of salts, such as sodium chloride, potassium acetate, etc., and some organic solvents, such as isopropanol, ethanol, etc. Under the action of high salt and organic solvents, nucleic acids will specifically bind with carriers or adsorbing materials, thereby achieving the separation and enrichment of nucleic acids.
- Characteristics: The formula of the binding solution needs to be optimized according to the type of nucleic acid and the nature of the carrier or adsorbing material. For example, for DNA extraction, commonly used binding solutions contain silicon matrix adsorbing materials, which can specifically adsorb DNA; for RNA extraction, the binding solution may add some special reagents, such as guanidine salts, to improve the binding efficiency of RNA.
Washing solution
- Function: The main function of the washing solution is to remove impurities in the nucleic acid extract, such as proteins, polysaccharides, salts, etc. It usually contains low concentrations of salts and some organic solvents, such as ethanol, deionized water, etc. Through multiple washings, impurities can be effectively removed to improve the purity of nucleic acids.
- Characteristics: The formula of the washing solution needs to be adjusted according to the type of impurity and the nature of the nucleic acid. For example, for samples containing a large amount of protein impurities, the washing solution may add some protease inhibitors to prevent proteins from re-adsorbing to the nucleic acid during the washing process.
Elution solution
- Function: The main function of the elution solution is to elute the nucleic acids bound to the carrier or adsorbing material to obtain a pure nucleic acid solution. It is usually a low ionic strength buffer, such as TE buffer (Tris-HCl and EDTA) or water, etc. The pH value and ionic strength of the elution solution will affect the elution efficiency of the nucleic acid, so it needs to be optimized according to specific circumstances.
- Characteristics: The choice of elution solution should consider the requirements of subsequent experiments. If subsequent experiments such as enzymatic digestion and PCR that require high purity of nucleic acids are required, usually TE buffer will be chosen as the elution solution, because the EDTA in the TE buffer can inhibit the activity of nucleases and protect the nucleic acid from degradation.
Other auxiliary components
- Protease inhibitors: During the process of cell lysis, proteases in the cell will be released, which may degrade nucleic acids. Therefore, some nucleic acid extraction kits will add protease inhibitors, such as PMSF, AEBSF, etc., to inhibit the activity of proteases and protect the integrity of the nucleic acid.
- RNase inhibitor: When extracting RNA, in order to prevent RNA from being degraded by RNase enzymes, the kit usually adds RNase inhibitors, such as DEPC-treated water, RNasin, etc.
- Carrier or adsorbing material: Such as silicon matrix membrane, magnetic beads, etc., are the key components to achieve specific binding and separation of nucleic acids. The silicon matrix membrane has high nucleic acid binding ability and good chemical stability, while magnetic beads have the advantages of convenient operation and automation.
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